Index

A

accuracy() (DGCMetric method) act_func (BaseDecoder property) (BaseEncoder property) add_gaussian_noise() (in module pydgc.utils.transform) add_self_loop() (in module pydgc.models.ns4gc) Adj (class in pydgc.models.magi_batch) adj_t (Adj attribute) AE (class in pydgc.models.ae) (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) AE_decoder (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) AE_encoder (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) ae_igae_forward() (DCRN method) (DFCN method) AGCDRR (class in pydgc.models.agcdrr) AGCDRRPipeline (class in pydgc.pipelines.agcdrr_pipeline)

ari_score() (DGCMetric method) augment() (in module pydgc.models.ns4gc) augment_data() (AGCDRRPipeline method) (BasePipeline method) (CCGCPipeline method) (DAEGCPipeline method) (DCRNPipeline method) (DFCNPipeline method) (DGCLUSTERPipeline method) (GAEPipeline method) (GAESSCPipeline method) (HSANPipeline method) (MAGIBatchPipeline method) (MAGIPipeline method) (NS4GCPipeline method) (SDCNPipeline method) auto_select_device() (in module pydgc.utils.device) aux_objective() (in module pydgc.models.dgcluster)

B

BaseDecoder (class in pydgc.modules.decoder) BaseEncoder (class in pydgc.modules.encoder) BasePipeline (class in pydgc.pipelines.base_pipeline) batch_size (NeighborSampler attribute) build_model() (AGCDRRPipeline method) (BasePipeline method) (CCGCPipeline method) (DAEGCPipeline method) (DCRNPipeline method) (DFCNPipeline method) (DGCLUSTERPipeline method) (GAEPipeline method) (GAESSCPipeline method) (HSANPipeline method) (MAGIBatchPipeline method) (MAGIPipeline method) (NS4GCPipeline method) (SDCNPipeline method)

build_results_dict() (in module pydgc.metrics.utils)

C

calc_loss() (IGAE static method) CCGC (class in pydgc.models.ccgc) CCGCPipeline (class in pydgc.pipelines.ccgc_pipeline) check_required_cfg() (in module pydgc.utils.config) check_save_format() (DGCVisual static method) Cluster_layer (class in pydgc.models.agcdrr) clustering() (AE method) (AGCDRR method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (GAE method) (GAESSC method) (GATE method) (HSAN method) (in module pydgc.models.magi) (in module pydgc.models.magi_batch) (MAGI method) (MAGIBatch method) (NS4GC method) (SDCN method)

com_score() (DGCMetric method) comprehensive_similarity() (in module pydgc.models.hsan) convert_scipy_torch_sp() (in module pydgc.models.dgcluster) correlation_reduction_loss() (in module pydgc.models.dcrn) count_parameters() (in module pydgc.utils.device) create_logger() (in module pydgc.utils.logger) cross_correlation() (in module pydgc.models.dcrn)

D

DAEGC (class in pydgc.models.daegc) DAEGCPipeline (class in pydgc.pipelines.daegc_pipeline) dataset (NeighborSampler attribute) DCRN (class in pydgc.models.dcrn) DCRNPipeline (class in pydgc.pipelines.dcrn_pipeline) debug() (Logger method) default_cfg() (in module pydgc.utils.config) DFCN (class in pydgc.models.dfcn) DFCNPipeline (class in pydgc.pipelines.dfcn_pipeline) DGCGraphDataset (class in pydgc.datasets.utils) DGCLUSTER (class in pydgc.models.dgcluster) DGCLUSTERPipeline (class in pydgc.pipelines.dgcluster_pipeline) DGCMetric (class in pydgc.metrics.utils)

DGCModel (class in pydgc.models.dgc_model) DGCNonGraphDataset (class in pydgc.datasets.utils) DGCVisual (class in pydgc.utils.visualization) dicr_loss() (in module pydgc.models.dcrn) diffusion_adj() (in module pydgc.pipelines.dcrn_pipeline) (in module pydgc.utils.transform) distribution_loss() (in module pydgc.models.dcrn) download() (DGCGraphDataset method) (DGCNonGraphDataset method) (NonGraphDataset method) (UserDataset method) drop_edge() (in module pydgc.models.ns4gc) drop_last (NeighborSampler attribute) dump_cfg() (in module pydgc.utils.config)

E

e_id (Adj attribute) (EdgeIndex attribute) edge_index (EdgeIndex attribute) EdgeIndex (class in pydgc.models.magi_batch) embed() (NS4GC method) Encoder (class in pydgc.models.magi) (class in pydgc.models.magi_batch) error() (Logger method) evaluate() (AE method), [1] (AGCDRR method) (BasePipeline method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (GAE method) (GAESSC method) (GATE method) (HSAN method) (MAGI method) (MAGIBatch method) (NS4GC method) (SDCN method)

evaluate_one_epoch() (DGCMetric method)

F

f1_score() (DGCMetric method) fit() (KMeansGPU method) flag() (Logger method) forward() (AE method), [1], [2] (AE_decoder method), [1] (AE_encoder method), [1] (AGCDRR method) (BaseDecoder method) (BaseEncoder method) (CCGC method) (Cluster_layer method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (Encoder method), [1] (GAE method) (GAESSC method) (GATE method) (GATMConv method) (GATMEncoder method) (GCNConv method) (GNNAttributeDecoder method) (GNNEncoder method) (GNNLayer method), [1], [2] (HSAN method) (IGAE method), [1], [2] (IGAE_decoder method), [1] (IGAE_encoder method), [1], [2] (InnerProductDecoder static method) (Loss method), [1] (MAGI method) (MAGIBatch method) (MLPDecoder method) (MLPEncoder method) (NS4GC method) (Readout method) (SDCN method) (SSCLayer method) (ViewLearner method)

G

GAE (class in pydgc.models.gae) GAEPipeline (class in pydgc.pipelines.gae_pipeline) GAESSC (class in pydgc.models.gae_ssc) GAESSCPipeline (class in pydgc.pipelines.gae_ssc_pipeline) GATE (class in pydgc.models.daegc) GATMConv (class in pydgc.modules.encoder) GATMEncoder (class in pydgc.modules.encoder) gaussian_noised_feature() (in module pydgc.models.dcrn) GCNConv (class in pydgc.models.ns4gc) generate_default_cfg() (in module pydgc.utils.config) get_batch() (NeighborSampler method) get_current_gpu_usage() (in module pydgc.utils.device) get_embedding() (AE method) (AGCDRR method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (GAE method) (GAESSC method) (GATE method) (HSAN method) (MAGI method) (MAGIBatch method) (NS4GC method) (SDCN method)

get_formatted_time() (in module pydgc.utils.logger) get_gpu_memory_map() (in module pydgc.utils.device) get_layer() (LayerRegistry class method) get_M() (in module pydgc.utils.transform) get_mask() (in module pydgc.models.magi_batch) (in module pydgc.pipelines.magi_batch_pipeline) (in module pydgc.pipelines.magi_pipeline) get_q() (SSCLayer method) get_sim() (in module pydgc.pipelines.magi_batch_pipeline) (in module pydgc.pipelines.magi_pipeline) GNNAttributeDecoder (class in pydgc.modules.decoder) GNNEncoder (class in pydgc.modules.encoder) GNNLayer (class in pydgc.models.agcdrr) (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) graph_reconstruction_error() (DGCMetric method)

H

hard_sample_aware_infoNCE() (in module pydgc.models.hsan) heat_kernel_knn_graph() (in module pydgc.datasets.utils) high_confidence() (HSAN method)

hom_score() (DGCMetric method) HSAN (class in pydgc.models.hsan) HSANPipeline (class in pydgc.pipelines.hsan_pipeline)

I

IGAE (class in pydgc.models.agcdrr) (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) IGAE_decoder (class in pydgc.models.dcrn) (class in pydgc.models.dfcn) IGAE_encoder (class in pydgc.models.agcdrr) (class in pydgc.models.dcrn) (class in pydgc.models.dfcn)

info() (Logger method) init_clustering() (in module pydgc.models.ccgc) init_emb() (ViewLearner method) initialize() (in module pydgc.clusterings.batch_kmeans_gpu) (KMeansGPU method) InnerProductDecoder (class in pydgc.modules.decoder)

K

kmeans() (in module pydgc.clusterings.batch_kmeans_gpu)

kmeans_predict() (in module pydgc.clusterings.batch_kmeans_gpu) KMeansGPU (class in pydgc.clusterings.kmeans_gpu)

L

laplacian_filtering() (in module pydgc.pipelines.hsan_pipeline) LayerRegistry (class in pydgc.modules.utils) list_layers() (LayerRegistry class method) load_config() (BasePipeline method) load_dataset() (BasePipeline method) (in module pydgc.datasets.utils) load_dataset_specific_cfg() (in module pydgc.utils.config) load_dgc_graph() (in module pydgc.datasets.utils) load_dgc_non_graph() (in module pydgc.datasets.utils) load_logger() (BasePipeline method) load_ogb() (in module pydgc.datasets.utils) load_pyg() (in module pydgc.datasets.utils) LoadAttribute (class in pydgc.datasets.utils) Logger (class in pydgc.utils.logger) Loss (class in pydgc.models.magi) (class in pydgc.models.magi_batch) loss() (AE method) (AGCDRR method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (GAE method) (GAESSC method) (GATE method) (HSAN method) (Logger method) (MAGI method) (MAGIBatch method) (NS4GC method) (SDCN method) (SSCLayer static method)

M

MAGI (class in pydgc.models.magi) MAGIBatch (class in pydgc.models.magi_batch) MAGIBatchPipeline (class in pydgc.pipelines.magi_batch_pipeline) MAGIPipeline (class in pydgc.pipelines.magi_pipeline) mask_feat() (in module pydgc.models.ns4gc) MLPDecoder (class in pydgc.modules.decoder) MLPEncoder (class in pydgc.modules.encoder) model_info() (Logger method) module pydgc.clusterings.batch_kmeans_gpu pydgc.clusterings.kmeans_gpu pydgc.datasets.utils pydgc.metrics.utils pydgc.models.ae pydgc.models.agcdrr pydgc.models.ccgc pydgc.models.daegc pydgc.models.dcrn pydgc.models.dfcn pydgc.models.dgc_model pydgc.models.dgcluster pydgc.models.gae pydgc.models.gae_ssc pydgc.models.hsan pydgc.models.magi pydgc.models.magi_batch pydgc.models.ns4gc pydgc.models.sdcn pydgc.modules.decoder pydgc.modules.encoder pydgc.modules.ssc pydgc.modules.utils pydgc.pipelines.agcdrr_pipeline pydgc.pipelines.base_pipeline pydgc.pipelines.ccgc_pipeline pydgc.pipelines.daegc_pipeline pydgc.pipelines.dcrn_pipeline pydgc.pipelines.dfcn_pipeline pydgc.pipelines.dgcluster_pipeline pydgc.pipelines.gae_pipeline pydgc.pipelines.gae_ssc_pipeline pydgc.pipelines.hsan_pipeline pydgc.pipelines.magi_batch_pipeline pydgc.pipelines.magi_pipeline pydgc.pipelines.ns4gc_pipeline pydgc.pipelines.sdcn_pipeline pydgc.utils.command pydgc.utils.config pydgc.utils.device pydgc.utils.logger pydgc.utils.random pydgc.utils.transform pydgc.utils.visualization

N

NeighborSampler (class in pydgc.models.magi_batch) new_graph() (in module pydgc.models.agcdrr) nmi_score() (DGCMetric method) NonGraphDataset (class in pydgc.datasets.utils) normalize() (in module pydgc.models.agcdrr) (in module pydgc.models.ns4gc) (in module pydgc.pipelines.dfcn_pipeline)

normalize_adj() (in module pydgc.models.dcrn) (in module pydgc.pipelines.dcrn_pipeline) (in module pydgc.pipelines.hsan_pipeline) normalize_adj_torch() (in module pydgc.utils.transform) NS4GC (class in pydgc.models.ns4gc) NS4GCPipeline (class in pydgc.pipelines.ns4gc_pipeline) num_workers (NeighborSampler attribute) numpy_to_torch() (in module pydgc.models.dcrn)

O

off_diagonal() (in module pydgc.models.dcrn)

P

pairwise_cosine() (KMeansGPU method) pairwise_distance() (in module pydgc.clusterings.batch_kmeans_gpu) (KMeansGPU method) parse_arguments() (in module pydgc.utils.command) perturb_data() (in module pydgc.utils.transform) phi() (in module pydgc.models.hsan) pin_memory (NeighborSampler attribute) pin_memory_device (NeighborSampler attribute) plot_clustering() (DGCVisual method) plot_heatmap() (DGCVisual method) plot_loss() (DGCVisual method) predict() (KMeansGPU method) prefetch_factor (NeighborSampler attribute) preprocess_custom_data() (in module pydgc.datasets.utils) preprocess_graph() (in module pydgc.pipelines.ccgc_pipeline) pretrain() (AE method), [1] (DAEGC method) (DCRN method) (DFCN method) (GAESSC method) (IGAE method), [1] (SDCN method) process() (NonGraphDataset method) (UserDataset method) processed_dir (NonGraphDataset property) processed_file_names (NonGraphDataset property) (UserDataset property) pseudo_matrix() (HSAN method) purity() (DGCMetric method) pydgc.clusterings.batch_kmeans_gpu module pydgc.clusterings.kmeans_gpu module pydgc.datasets.utils module pydgc.metrics.utils module pydgc.models.ae module pydgc.models.agcdrr module pydgc.models.ccgc module pydgc.models.daegc module pydgc.models.dcrn module pydgc.models.dfcn module pydgc.models.dgc_model module pydgc.models.dgcluster module pydgc.models.gae module pydgc.models.gae_ssc module pydgc.models.hsan module

pydgc.models.magi module pydgc.models.magi_batch module pydgc.models.ns4gc module pydgc.models.sdcn module pydgc.modules.decoder module pydgc.modules.encoder module pydgc.modules.ssc module pydgc.modules.utils module pydgc.pipelines.agcdrr_pipeline module pydgc.pipelines.base_pipeline module pydgc.pipelines.ccgc_pipeline module pydgc.pipelines.daegc_pipeline module pydgc.pipelines.dcrn_pipeline module pydgc.pipelines.dfcn_pipeline module pydgc.pipelines.dgcluster_pipeline module pydgc.pipelines.gae_pipeline module pydgc.pipelines.gae_ssc_pipeline module pydgc.pipelines.hsan_pipeline module pydgc.pipelines.magi_batch_pipeline module pydgc.pipelines.magi_pipeline module pydgc.pipelines.ns4gc_pipeline module pydgc.pipelines.sdcn_pipeline module pydgc.utils.command module pydgc.utils.config module pydgc.utils.device module pydgc.utils.logger module pydgc.utils.random module pydgc.utils.transform module pydgc.utils.visualization module

Q

q_distribute() (DCRN method)

R

r_loss() (in module pydgc.models.dcrn) raw_file_names (NonGraphDataset property) (UserDataset property) Readout (class in pydgc.models.dcrn) reconstruction_loss() (in module pydgc.models.dcrn) register_layer() (in module pydgc.modules.utils) regularization() (in module pydgc.models.dgcluster) remove_edge() (in module pydgc.models.dcrn) reset_parameters() (AE method), [1] (AE_decoder method) (AE_encoder method) (AGCDRR method) (BaseDecoder method) (BaseEncoder method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (Encoder method), [1] (GAE method) (GAESSC method) (GATE method) (GATMConv method) (GATMEncoder method) (GCNConv method) (GNNAttributeDecoder method) (GNNEncoder method) (GNNLayer method) (HSAN method) (IGAE method) (IGAE_decoder method) (IGAE_encoder method) (InnerProductDecoder method) (MAGI method) (MAGIBatch method) (MLPEncoder method) (NS4GC method) (SDCN method) (SSCLayer method)

run() (BasePipeline method)

S

sample() (NeighborSampler method) sampler (NeighborSampler attribute) scale() (in module pydgc.models.magi) (in module pydgc.models.magi_batch) SDCN (class in pydgc.models.sdcn) SDCNPipeline (class in pydgc.pipelines.sdcn_pipeline) setup_seed() (in module pydgc.utils.random) sil_score() (DGCMetric method)

size (Adj attribute) (EdgeIndex attribute) sparse_diag() (in module pydgc.models.ns4gc) sparse_identity() (in module pydgc.models.ns4gc) sparse_mx_to_torch_sparse_tensor() (in module pydgc.pipelines.dcrn_pipeline) (in module pydgc.pipelines.dfcn_pipeline) (in module pydgc.utils.transform) square_euclid_distance() (in module pydgc.models.hsan) SSCLayer (class in pydgc.modules.ssc)

T

table() (Logger static method) target_distribution() (in module pydgc.models.dcrn) (in module pydgc.models.dfcn) (in module pydgc.utils.transform) timeout (NeighborSampler attribute) to() (Adj method) (EdgeIndex method) train_model() (AE method) (AGCDRR method) (CCGC method) (DAEGC method) (DCRN method) (DFCN method) (DGCLUSTER method) (DGCModel method) (GAE method) (GAESSC method) (GATE method) (HSAN method) (MAGI method) (MAGIBatch method) (NS4GC method) (SDCN method) training (AE attribute), [1], [2] (AE_decoder attribute), [1] (AE_encoder attribute), [1] (AGCDRR attribute) (BaseDecoder attribute) (BaseEncoder attribute) (CCGC attribute) (Cluster_layer attribute) (DAEGC attribute) (DCRN attribute) (DFCN attribute) (DGCLUSTER attribute) (DGCModel attribute) (Encoder attribute), [1] (GAE attribute) (GAESSC attribute) (GATE attribute) (GATMConv attribute) (GATMEncoder attribute) (GCNConv attribute) (GNNAttributeDecoder attribute) (GNNEncoder attribute) (GNNLayer attribute), [1], [2] (HSAN attribute) (IGAE attribute), [1], [2] (IGAE_decoder attribute), [1] (IGAE_encoder attribute), [1], [2] (InnerProductDecoder attribute) (Loss attribute), [1] (MAGI attribute) (MAGIBatch attribute) (MLPDecoder attribute) (MLPEncoder attribute) (NS4GC attribute) (Readout attribute) (SDCN attribute) (SSCLayer attribute) (ViewLearner attribute)

U

UserDataset (class in pydgc.datasets.utils)

V

validate_and_create_path() (in module pydgc.utils.config)

ViewLearner (class in pydgc.models.agcdrr) visualize() (BasePipeline method)

W

warning() (Logger method)

Y

yaml_to_cfg() (in module pydgc.utils.config)